Setup and time to launch
Shopify is a hosted SaaS: sign up, pick a theme, connect a domain and payments, and you can sell the same week. WooCommerce is a WordPress plugin — you first need hosting, WordPress, a theme, WooCommerce, payment plugins and often a caching/CDN layer. A serious WooCommerce build usually takes 3–6 weeks; a serious Shopify build 2–4 weeks.
Cost of ownership over 3 years
Shopify's fees look higher month-to-month (plan + app subscriptions + payment fees), but they replace hosting, security patches, plugin updates and downtime. WooCommerce looks cheaper in year one and gets more expensive by year three as plugin licenses renew and you pay a developer to keep updates from breaking checkout.
Design and customisation
Shopify's theme system (Liquid + sections) is deliberately constrained — great for consistency, limiting if you want a bespoke product page. WooCommerce inherits everything WordPress can do: any block builder, any theme, any custom post type. If your product page is more like an editorial article, WooCommerce wins.
Payments in India
Shopify integrates with Razorpay, Cashfree, PayU and its own Shopify Payments (via Razorpay). WooCommerce supports the same providers via plugins. Both handle UPI, cards and netbanking; the difference is that Shopify's payment settlement is more predictable and disputes are handled inside one dashboard.
SEO and content
WooCommerce inherits WordPress's SEO ecosystem (Yoast, Rank Math, huge blog control). Shopify's SEO is fine for standard product/collection/article pages, but URL structure is fixed (/collections/, /products/) and blog features are basic. Content-led brands (recipes, guides, editorial) usually pick WooCommerce.
Maintenance and reliability
Shopify runs on Shopify's infrastructure — you don't wake up to a WordPress site that went down after an auto-update. WooCommerce reliability depends on your host, plugin choices and update discipline. For most SMB teams without a dedicated developer, that's the single biggest reason to pick Shopify.